Introduction to Bioinformatics

Example Code from
Beginning Perl for Bioinformatics


This page contains an uncompressed copy of example code from your course text, downloaded on January 15, 2003. Please see the official Beginning Perl for Bioinformatics Website under the heading "Examples and Exercises" for any updates to this code.
General files


Chapter 4

NOTE: Examples 4-5 to 4-7 also require the protein sequence data file: NM_021964fragment.pep.txt - To match the example in your book, save the file out with the name: NM_021964fragment.pep

Chapter 5

NOTE: Example 5-3 also requires the protein sequence data file: NM_021964fragment.pep.txt - To match the example in your book, save the file out with the name: NM_021964fragment.pep
NOTE: Example 5-4, 5-6 and 5-7 also require the DNA file: small.dna.txt - To match the example in your book, save the file out with the name: small.dna

Chapter 6

NOTE: BeginPerlBioinfo.pm may be needed to execute some code examples from this chapter. Place this file in the same directory as your .pl files.

Chapter 7

NOTE: BeginPerlBioinfo.pm may be needed to execute some code examples from this chapter. Place this file in the same directory as your .pl files.

Chapter 8

NOTE: BeginPerlBioinfo.pm may be needed to execute some code examples from this chapter. Place this file in the same directory as your .pl files.

NOTE: Example 8-2,8-3 and 8-4 also require the DNA file: sample.dna.txt - To match the example in your book, save the file out with the name: sample.dna

Chapter 9

NOTE: BeginPerlBioinfo.pm may be needed to execute some code examples from this chapter. Place this file in the same directory as your .pl files.